2lye image
Deposition Date 2012-09-18
Release Date 2012-11-28
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2LYE
Title:
High resolution NMR solution structure of a symmetrical theta-defensin, BTD-2
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BTD-2
Chain IDs:A
Chain Length:18
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Structural characterization of the cyclic cystine ladder motif of theta-defensins.
Biochemistry 51 9718 9726 (2012)
PMID: 23148585 DOI: 10.1021/bi301363a

Abstact

The θ-defensins are, to date, the only known ribosomally synthesized cyclic peptides in mammals, and they have promising antimicrobial bioactivities. The characteristic structural motif of the θ-defensins is the cyclic cystine ladder, comprising a cyclic peptide backbone and three parallel disulfide bonds. In contrast to the cyclic cystine knot, which characterizes the plant cyclotides, the cyclic cystine ladder has not been as well described as a structural motif. Here we report the solution structures and nuclear magnetic resonance relaxation properties in aqueous solution of three representative θ-defensins from different species. Our data suggest that the θ-defensins are more rigid and structurally defined than previously thought. In addition, all three θ-defensins were found to self-associate in aqueous solution in a concentration-dependent and reversible manner, a property that might have a role in their mechanism of action. The structural definition of the θ-defensins and the cyclic cystine ladder will help to guide exploitation of these molecules as structural frameworks for the design of peptide drugs.

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