2kfx image
Deposition Date 2009-02-28
Release Date 2009-06-09
Last Version Date 2024-05-22
Entry Detail
PDB ID:
2KFX
Title:
Structure of the N-terminal domain of human cardiac troponin C bound to calcium ion and to the inhibitor W7
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Troponin C, slow skeletal and cardiac muscles
Gene (Uniprot):TNNC1
Mutations:C35S, C84S
Chain IDs:A (auth: T)
Chain Length:89
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of the inhibitor W7 bound to the regulatory domain of cardiac troponin C.
Biochemistry 48 5541 5552 (2009)
PMID: 19419198 DOI: 10.1021/bi9001826

Abstact

The calmodulin antagonist W7 binds to troponin C in the presence of Ca(2+) and inhibits striated muscle contraction. This study integrates multiple data into the structure of the regulatory domain of human cardiac troponin C (cNTnC) bound to Ca(2+) and W7. The protein-W7 interface is defined through a three-dimensional {(1)H,(13)C}-edited-{(1)H,(12)C}-detected NOESY NMR experiment, and other aspects of the structure are modeled as perturbations to previously known coordinates and restraints. The structure determination protocol optimizes the protein-W7 contacts prior to the introduction of protein-W7 steric interactions or conformational changes in the protein. The structure determination protocol gives families of conformers that all have an optimal docking as assessed by satisfaction of the target function. The structure supports the previously proposed troponin I blocking mechanism for the activity of W7 in striated muscle and suggests a role for the flexible tail of W7 in stabilization of the bound state. This clarifies the structure-activity relationships of W7 and implicates an electrostatically mediated component of activity in common analogues of W7, including the antipsychotic trifluoroperazine and the cardiotonic levosimendan.

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