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Entry Detail
PDB ID:
2K0R
Keywords:
Title:
Solution structure of the C103S mutant of the N-terminal Domain of DsbD from Neisseria meningitidis
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2008-02-13
Release Date:
2008-11-11
Method Details:
Experimental Method:
Conformers Calculated:
1500
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thiol:disulfide interchange protein dsbD
Chain IDs:A
Chain Length:128
Number of Molecules:1
Biological Source:Neisseria meningitidis serogroup B
Ligand Molecules
Primary Citation
Solution structure and backbone dynamics of the cysteine 103 to serine mutant of the N-terminal domain of DsbD from Neisseria meningitidis.
Biochemistry 47 12710 12720 (2008)
PMID: 18983169 DOI: 10.1021/bi801343c

Abstact

The DsbD protein is essential for electron transfer from the cytoplasm to the periplasm of Gram-negative bacteria. Its N-terminal domain dispatches electrons coming from cytoplasmic thioredoxin (Trx), via its central transmembrane and C-terminal domains, to its periplasmic partners: DsbC, DsbE/CcmG, and DsbG. Previous structural studies described the latter proteins as Trx-like folds possessing a characteristic C-X-X-C motif able to generate a disulfide bond upon oxidation. The Escherichia coli nDsbD displays an immunoglobulin-like fold in which two cysteine residues (Cys103 and Cys109) allow a disulfide bond exchange with its biological partners.We have determined the structure in solution and the backbone dynamics of the C103S mutant of the N-terminal domain of DsbD from Neisseria meningitidis. Our results highlight significant structural changes concerning the beta-sheets and the local topology of the active site compared with the oxidized form of the E. coli nDsbD. The structure reveals a "cap loop" covering the active site, similar to the oxidized E. coli nDsbD X-ray structure. However, regions featuring enhanced mobility were observed both near to and distant from the active site, revealing a capacity of structural adjustments in the active site and in putative interaction areas with nDsbD biological partners. Results are discussed in terms of functional consequences.

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