2ZSW image
Deposition Date 2008-09-18
Release Date 2008-11-04
Last Version Date 2023-11-15
Entry Detail
PDB ID:
2ZSW
Keywords:
Title:
Crystal structure of H-2Kb in complex with the Q600Y variant of JHMV epitope S598
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:H-2 class I histocompatibility antigen, K-B alpha chain
Gene (Uniprot):H2-K1
Chain IDs:A, B (auth: E), C, D (auth: G)
Chain Length:278
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:E (auth: H), F, G (auth: B), H (auth: D)
Chain Length:99
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:8-mer peptide from spike glycoprotein
Chain IDs:I (auth: M), J (auth: N), K (auth: O), L (auth: P)
Chain Length:8
Number of Molecules:4
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ABA I ALA ALPHA-AMINOBUTYRIC ACID
Primary Citation
Prevention of cytotoxic T cell escape using a heteroclitic subdominant viral T cell determinant.
Plos Pathog. 4 ? ? (2008)
PMID: 18949029 DOI: 10.1371/journal.ppat.1000186

Abstact

High affinity antigen-specific T cells play a critical role during protective immune responses. Epitope enhancement can elicit more potent T cell responses and can subsequently lead to a stronger memory pool; however, the molecular basis of such enhancement is unclear. We used the consensus peptide-binding motif for the Major Histocompatibility Complex molecule H-2K(b) to design a heteroclitic version of the mouse hepatitis virus-specific subdominant S598 determinant. We demonstrate that a single amino acid substitution at a secondary anchor residue (Q to Y at position 3) increased the stability of the engineered determinant in complex with H-2K(b). The structural basis for this enhanced stability was associated with local alterations in the pMHC conformation as a result of the Q to Y substitution. Recombinant viruses encoding this engineered determinant primed CTL responses that also reacted to the wildtype epitope with significantly higher functional avidity, and protected against selection of virus mutated at a second CTL determinant and consequent disease progression in persistently infected mice. Collectively, our findings provide a basis for the enhanced immunogenicity of an engineered determinant that will serve as a template for guiding the development of heteroclitic T cell determinants with applications in prevention of CTL escape in chronic viral infections as well as in tumor immunity.

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Primary Citation of related structures