2ZPK image
Deposition Date 2008-07-16
Release Date 2008-12-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2ZPK
Keywords:
Title:
Crystal structure of P20.1 Fab fragment in complex with its antigen peptide
Biological Source:
Source Organism:
(Taxon ID: )Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:IgG1-lambda P20.1 Fab (heavy chain)
Chain IDs:B (auth: H), E (auth: I)
Chain Length:216
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:IgG1-lambda P20.1 Fab (light chain)
Chain IDs:A (auth: L), D (auth: M)
Chain Length:212
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Proteinase-activated receptor 4
Gene (Uniprot):F2RL3
Chain IDs:C (auth: P), F (auth: Q)
Chain Length:8
Number of Molecules:2
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLN PYROGLUTAMIC ACID
Ligand Molecules
Primary Citation
Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification
Protein Sci. 17 2120 2126 (2008)
PMID: 18787202 DOI: 10.1110/ps.038299.108

Abstact

Biologically important human proteins often require mammalian cell expression for structural studies, presenting technical and economical problems in the production/purification processes. We introduce a novel affinity peptide tagging system that uses a low affinity anti-peptide monoclonal antibody. Concatenation of the short recognition sequence enabled the successful engineering of an 18-residue affinity tag with ideal solution binding kinetics, providing a low-cost purification means when combined with nondenaturing elution by water-miscible organic solvents. Three-dimensional information provides a firm structural basis for the antibody-peptide interaction, opening opportunities for further improvements/modifications.

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Primary Citation of related structures