2ZNE image
Deposition Date 2008-04-22
Release Date 2008-09-09
Last Version Date 2023-11-01
Entry Detail
PDB ID:
2ZNE
Keywords:
Title:
Crystal structure of Zn2+-bound form of des3-23ALG-2 complexed with Alix ABS peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Programmed cell death protein 6
Gene (Uniprot):PDCD6
Chain IDs:A, B
Chain Length:169
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:16-meric peptide from Programmed cell death 6-interacting protein
Gene (Uniprot):PDCD6IP
Mutations:C15S
Chain IDs:C, D
Chain Length:16
Number of Molecules:2
Biological Source:
Primary Citation
Structural Basis for Ca(2+)-Dependent Formation of ALG-2/Alix Peptide Complex: Ca(2+)/EF3-Driven Arginine Switch Mechanism
Structure 16 1562 1573 (2008)
PMID: 18940611 DOI: 10.1016/j.str.2008.07.012

Abstact

ALG-2 belongs to the penta-EF-hand (PEF) protein family and interacts with various intracellular proteins, such as Alix and TSG101, that are involved in endosomal sorting and HIV budding. Through X-ray crystallography, we solved the structures of Ca(2+)-free and -bound forms of N-terminally truncated human ALG-2 (des3-20ALG-2), Zn(2+)-bound form of full-length ALG-2, and the structure of the complex between des3-23ALG-2 and the peptide corresponding to Alix799-814 in Zn(2+)-bound form. Binding of Ca(2+) to EF3 enables the side chain of Arg125, present in the loop connecting EF3 and EF4, to move enough to make a primary hydrophobic pocket accessible to the critical PPYP motif, which partially overlaps with the GPP motif for the binding of Cep55 (centrosome protein 55 kDa). Based on these results, together with the results of in vitro binding assay with mutant ALG-2 and Alix proteins, we propose a Ca(2+)/EF3-driven arginine switch mechanism for ALG-2 binding to Alix.

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