2ZFI image
Deposition Date 2008-01-07
Release Date 2008-09-23
Last Version Date 2023-11-01
Entry Detail
PDB ID:
2ZFI
Title:
Crystal Structure of the Kif1A Motor Domain Before Mg Release
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kinesin-like protein KIF1A, Kinesin heavy chain isoform 5C
Gene (Uniprot):Kif1a
Chain IDs:A
Chain Length:366
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Structural model for strain-dependent microtubule activation of Mg-ADP release from kinesin.
Nat.Struct.Mol.Biol. 15 1067 1075 (2008)
PMID: 18806800 DOI: 10.1038/nsmb.1487

Abstact

Mg-ADP release is considered to be a crucial process for the regulation and motility of kinesin. To gain insight into the structural basis of this process, we solved the atomic structures of kinesin superfamily protein-1A (KIF1A) during and after Mg(2+) release. On the basis of new structural and mutagenesis data, we propose a model mechanism for microtubule activation of Mg-ADP release from KIF1A. In our model, a specific interaction between loop L7 of KIF1A and beta-tubulin reconfigures the KIF1A active site by shifting the relative positions of switches I and II. This leads to the sequential release of a group of water molecules that sits over the Mg(2+) in the active site, followed by Mg(2+) and finally the ADP. We further propose that this set of events is linked to a strain-dependent docking of the neck linker to the motor core, which produces a two-step power stroke.

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