2ZDV image
Deposition Date 2007-11-29
Release Date 2008-10-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2ZDV
Keywords:
Blood Clotting/Hydrolase Inhibitor
Title:
Exploring Thrombin S1 pocket
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.72 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
2ZDV validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin Heavy Chain
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hirudin variant-1
Chain IDs:C (auth: I)
Chain Length:11
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P01050
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thrombin Light Chain
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:36
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR O-SULFO-L-TYROSINE
Ligand Molecules
37U
NA
PO4
Peptide-like Molecules
PRD_000602
Primary Citation
Exploring Thrombin S1 pocket
To be Published ? ? ? (?)
Primary Citation of related structures
1H8D
1YPG
2ZC9
2ZDA