2ZAG image
Deposition Date 2007-10-05
Release Date 2007-12-11
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2ZAG
Keywords:
Title:
Crystal structure of the SeMet-substituted soluble domain of STT3 from P. furiosus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oligosaccharyl transferase stt3 subunit related protein
Gene (Uniprot):aglB1
Chain IDs:A, B, C, D
Chain Length:497
Number of Molecules:4
Biological Source:Pyrococcus furiosus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structure-guided identification of a new catalytic motif of oligosaccharyltransferase
Embo J. 27 234 243 (2008)
PMID: 18046457 DOI: 10.1038/sj.emboj.7601940

Abstact

Asn-glycosylation is widespread not only in eukaryotes but also in archaea and some eubacteria. Oligosaccharyltransferase (OST) catalyzes the co-translational transfer of an oligosaccharide from a lipid donor to an asparagine residue in nascent polypeptide chains. Here, we report that a thermophilic archaeon, Pyrococcus furiosus OST is composed of the STT3 protein alone, and catalyzes the transfer of a heptasaccharide, containing one hexouronate and two pentose residues, onto peptides in an Asn-X-Thr/Ser-motif-dependent manner. We also determined the 2.7-A resolution crystal structure of the C-terminal soluble domain of Pyrococcus STT3. The structure-based multiple sequence alignment revealed a new motif, DxxK, which is adjacent to the well-conserved WWDYG motif in the tertiary structure. The mutagenesis of the DK motif residues in yeast STT3 revealed the essential role of the motif in the catalytic activity. The function of this motif may be related to the binding of the pyrophosphate group of lipid-linked oligosaccharide donors through a transiently bound cation. Our structure provides the first structural insights into the formation of the oligosaccharide-asparagine bond.

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Primary Citation of related structures