ISDA: 2Z8Z

Deposition Date 2007-09-13

Release Date 2007-10-30

Last Version Date 2023-11-01

Entry Detail

PDB ID:

2Z8Z

Keywords:

HYDROLASE

Title:

Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase

Biological Source:

Source Organism:

Pseudomonas sp. (Taxon ID: 91465)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.80 Å

R-Value Free:

0.20

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Lipase
Mutagens:S445C
Chain IDs:A
Chain Length:617
Number of Molecules:1
Biological Source:Pseudomonas sp.

UniProt ID:Q9RBY1 Pfam ID:PF00353 EC:3.1.1.3

Ligand Molecules

Primary Citation

Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation

Angkawidjaja, C, You, D.J, Matsumura, H, Kuwahara, K, Koga, Y, Takano, K, Kanaya, S.Show

FEBS Lett. 581 5060 5064 (2007)

PMID: 17923123 DOI: 10.1016/j.febslet.2007.09.048

Abstact

The crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation was determined at 1.5A resolution. This structure highly resembles that of Serratia marcescens LipA in an open conformation, except for the structures of two lids. Lid1 is anchored by a Ca2+ ion (Ca1) in an open conformation, but lacks this Ca1 site and greatly changes its structure and position in a closed conformation. Lid2 forms a helical hairpin in an open conformation, but does not form it and covers the active site in a closed conformation. Based on these results, we discuss on the lid-opening mechanism.

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