2Z6F image
Deposition Date 2007-07-31
Release Date 2008-07-29
Last Version Date 2023-11-01
Entry Detail
PDB ID:
2Z6F
Title:
Crystal structure of NEAT domain from Staphylococcus aureus in complex with heme
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Iron-regulated surface determinant protein H
Gene (Uniprot):isdH
Chain IDs:A
Chain Length:131
Number of Molecules:1
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus
J.Biol.Chem. 283 28649 28659 (2008)
PMID: 18667422 DOI: 10.1074/jbc.M803383200

Abstact

To elucidate the heme acquisition system in pathogenic bacteria, we investigated the heme-binding properties of the third NEAT domain of IsdH (IsdH-NEAT3), a receptor for heme located on the surfaces of pathogenic bacterial cells, by using x-ray crystallography, isothermal titration calorimetry, examination of absorbance spectra, mutation analysis, size-exclusion chromatography, and analytical ultracentrifugation. We found the following: 1) IsdH-NEAT3 can bind with multiple heme molecules by two modes; 2) heme was bound at the surface of IsdH-NEAT3; 3) candidate residues proposed from the crystal structure were not essential for binding with heme; and 4) IsdH-NEAT3 was associated into a multimeric heme complex by the addition of excess heme. From these observations, we propose a heme-binding mechanism for IsdH-NEAT3 that involves multimerization and discuss the biological importance of this mechanism.

Legend

Protein

Chemical

Disease

Primary Citation of related structures