2Z3X image
Deposition Date 2007-06-08
Release Date 2008-02-12
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2Z3X
Title:
Structure of a Protein-DNA Complex Essential for DNA Protection in Spore of Bacillus Species
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small, acid-soluble spore protein C
Gene (Uniprot):sspC
Mutagens:N13A, D14K
Chain IDs:C (auth: A), D (auth: B), E (auth: C)
Chain Length:63
Number of Molecules:3
Biological Source:Bacillus subtilis
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*GP*GP*GP*GP*GP*GP*GP*GP*GP*GP*A)-3'
Chain IDs:A (auth: D)
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*A)-3'
Chain IDs:B (auth: E)
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.
Proc. Natl. Acad. Sci. U.S.A. 105 2806 2811 (2008)
PMID: 18287075 DOI: 10.1073/pnas.0708244105

Abstact

The DNA-binding alpha/beta-type small acid-soluble proteins (SASPs) are a major factor in the resistance and long-term survival of spores of Bacillus species by protecting spore DNA against damage due to desiccation, heat, toxic chemicals, enzymes, and UV radiation. We now report the crystal structure at 2.1 A resolution of an alpha/beta-type SASP bound to a 10-bp DNA duplex. In the complex, the alpha/beta-type SASP adopt a helix-turn-helix motif, interact with DNA through minor groove contacts, bind to approximately 6 bp of DNA as a dimer, and the DNA is in an A-B type conformation. The structure of the complex provides important insights into the molecular details of both DNA and alpha/beta-type SASP protection in the complex and thus also in spores.

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