2Z2E image
Deposition Date 2007-05-21
Release Date 2007-11-27
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2Z2E
Keywords:
Title:
Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.41
R-Value Work:
0.27
R-Value Observed:
0.27
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme C, milk isozyme
Mutations:N44Q/N47Q/N49Q/N68Q/N103Q
Chain IDs:A, B
Chain Length:129
Number of Molecules:2
Biological Source:Canis lupus familiaris
Ligand Molecules
Primary Citation
Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins 72 313 322 (2008)
PMID: 18214981 DOI: 10.1002/prot.21927

Abstact

Asparaginyl deamidation is a common form of nonenzymatic degradation of proteins and peptides. As it introduces a negative charge spontaneously and irreversibly, charge heterogeneity can be accumulated in protein solution during purification, preservation, and experiments. In this study, canine milk lysozyme (CML), a useful model for the study of the molten globule state, exhibited charge heterogeneity after sample purification. Four Asn residues in CML deamidated rapidly under mild conditions: pH 8.0 and 30 degrees C. Other than these residues, one Asn residue, which was stable in the native state, was labile to deamidation in the unfolded state. This suggests that the structural formation around Asn can suppress deamidation. Substitutions of these labile Asn residues to Gln residues prevented deamidation effectively. Because the substitutions did not disrupt the structural formation of the native and molten globule states, they will enable more precise analyses for physical and structural studies.

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Primary Citation of related structures