2YZB image
Deposition Date 2007-05-05
Release Date 2008-05-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
2YZB
Keywords:
Title:
Crystal structure of uricase from Arthrobacter globiformis in complex with uric acid (substrate)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.22
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uricase
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:302
Number of Molecules:8
Biological Source:Arthrobacter globiformis
Ligand Molecules
Primary Citation
Structures of Arthrobacter globiformis urate oxidase-ligand complexes.
Acta Crystallogr.,Sect.D D64 815 822 (2008)
PMID: 18645230 DOI: 10.1107/S0907444908013590

Abstact

The enzyme urate oxidase catalyzes the conversion of uric acid to 5-hydroxyisourate, one of the steps in the ureide pathway. Arthrobacter globiformis urate oxidase (AgUOX) was crystallized and structures of crystals soaked in the substrate uric acid, the inhibitor 8-azaxanthin and allantoin have been determined at 1.9-2.2 A resolution. The biological unit is a homotetramer and two homotetramers comprise the asymmetric crystallographic unit. Each subunit contains two T-fold domains of betabetaalphaalphabetabeta topology, which are usually found in purine- and pterin-binding enzymes. The uric acid substrate is bound tightly to the enzyme by interactions with Arg180, Leu222 and Gln223 from one subunit and with Thr67 and Asp68 of the neighbouring subunit in the tetramer. In the other crystal structures, lithium borate, 8-azaxanthin and allantoate are bound to the enzyme in a similar manner as uric acid. Based on these AgUOX structures, the enzymatic reaction mechanism of UOX has been proposed.

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Primary Citation of related structures