2YXG image
Deposition Date 2007-04-26
Release Date 2007-10-30
Last Version Date 2023-10-25
Entry Detail
PDB ID:
2YXG
Keywords:
Title:
Crystal structure of Dihyrodipicolinate Synthase (dapA)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dihydrodipicolinate synthase
Gene (Uniprot):dapA
Chain IDs:A, B, C, D
Chain Length:289
Number of Molecules:4
Biological Source:Methanocaldococcus jannaschii DSM 2661
Primary Citation
Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F 65 1222 1226 (2009)
PMID: 20054116 DOI: 10.1107/S174430910904651X

Abstact

In bacteria and plants, dihydrodipicolinate synthase (DHDPS) plays a key role in the (S)-lysine biosynthesis pathway. DHDPS catalyzes the first step of the condensation of (S)-aspartate-beta-semialdehyde and pyruvate to form an unstable compound, (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid. The activity of DHDPS is allosterically regulated by (S)-lysine, a feedback inhibitor. The crystal structure of DHDPS from Methanocaldococcus jannaschii (MjDHDPS) was solved by the molecular-replacement method and was refined to 2.2 A resolution. The structure revealed that MjDHDPS forms a functional homotetramer, as also observed in Escherichia coli DHDPS, Thermotoga maritima DHDPS and Bacillus anthracis DHDPS. The binding-site region of MjDHDPS is essentially similar to those found in other known DHDPS structures.

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