2YQ5 image
Deposition Date 2012-11-05
Release Date 2012-11-21
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2YQ5
Keywords:
Title:
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE
Gene (Uniprot):Ldb1010
Chain IDs:A, B, C, D
Chain Length:343
Number of Molecules:4
Biological Source:LACTOBACILLUS DELBRUECKII SUBSP. BULGARICUS
Ligand Molecules
Primary Citation
Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol. 181 179 ? (2013)
PMID: 23110853 DOI: 10.1016/J.JSB.2012.10.009

Abstact

Hydroxyacid dehydrogenases, responsible for the stereospecific conversion of 2-keto acids to 2-hydroxyacids in lactic acid producing bacteria, have a range of biotechnology applications including antibiotic synthesis, flavor development in dairy products and the production of valuable synthons. The genome of Lactobacillus delbrueckii ssp. bulgaricus, a member of the heterogeneous group of lactic acid bacteria, encodes multiple hydroxyacid dehydrogenases whose structural and functional properties remain poorly characterized. Here, we report the apo and coenzyme NAD⁺ complexed crystal structures of the L. bulgaricusD-isomer specific 2-hydroxyacid dehydrogenase, D2-HDH. Comparison with closely related members of the NAD-dependent dehydrogenase family reveals that whilst the D2-HDH core fold is structurally conserved, the substrate-binding site has a number of non-canonical features that may influence substrate selection and thus dictate the physiological function of the enzyme.

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Primary Citation of related structures
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