2YPT image
Deposition Date 2012-11-01
Release Date 2012-12-05
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2YPT
Title:
Crystal structure of the human nuclear membrane zinc metalloprotease ZMPSTE24 mutant (E336A) in complex with a synthetic CSIM tetrapeptide from the C-terminus of prelamin A
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CAAX PRENYL PROTEASE 1 HOMOLOG
Gene (Uniprot):ZMPSTE24
Mutagens:YES
Chain IDs:A, B, C (auth: D), D (auth: E)
Chain Length:482
Number of Molecules:4
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PRELAMIN-A/C
Gene (Uniprot):LMNA
Chain IDs:E (auth: F), F (auth: G), G (auth: H), H (auth: I)
Chain Length:4
Number of Molecules:4
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation

Abstact

Mutations in the nuclear membrane zinc metalloprotease ZMPSTE24 lead to diseases of lamin processing (laminopathies), such as the premature aging disease progeria and metabolic disorders. ZMPSTE24 processes prelamin A, a component of the nuclear lamina intermediate filaments, by cleaving it at two sites. Failure of this processing results in accumulation of farnesylated, membrane-associated prelamin A. The 3.4 angstrom crystal structure of human ZMPSTE24 has a seven transmembrane α-helical barrel structure, surrounding a large, water-filled, intramembrane chamber, capped by a zinc metalloprotease domain with the catalytic site facing into the chamber. The 3.8 angstrom structure of a complex with a CSIM tetrapeptide showed that the mode of binding of the substrate resembles that of an insect metalloprotease inhibitor in thermolysin. Laminopathy-associated mutations predicted to reduce ZMPSTE24 activity map to the zinc metalloprotease peptide-binding site and to the bottom of the chamber.

Legend

Protein

Chemical

Disease

Primary Citation of related structures