2YOK image
Deposition Date 2012-10-25
Release Date 2012-11-14
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2YOK
Keywords:
Title:
Cellobiohydrolase I Cel7A from Trichoderma harzianum at 1.7 A resolution
Biological Source:
Source Organism:
HYPOCREA LIXII (Taxon ID: 5544)
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.16
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:EXOGLUCANASE 1
Gene (Uniprot):cbh1
Chain IDs:A
Chain Length:426
Number of Molecules:1
Biological Source:HYPOCREA LIXII
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
PCA A GLU PYROGLUTAMIC ACID
Primary Citation
Joint X-Ray Crystallographic and Molecular Dynamics Study of Cellobiohydrolase I from Trichoderma Harzianum: Deciphering the Structural Features of Cellobiohydrolase Catalytic Activity.
FEBS J. 280 56 ? (2013)
PMID: 23114223 DOI: 10.1111/FEBS.12049

Abstact

Aiming to contribute toward the characterization of new, biotechnologically relevant cellulolytic enzymes, we report here the first crystal structure of the catalytic core domain of Cel7A (cellobiohydrolase I) from the filamentous fungus Trichoderma harzianum IOC 3844. Our structural studies and molecular dynamics simulations show that the flexibility of Tyr260, in comparison with Tyr247 from the homologous Trichoderma reesei Cel7A, is enhanced as a result of the short side-chains of adjacent Val216 and Ala384 residues and creates an additional gap at the side face of the catalytic tunnel. T. harzianum cellobiohydrolase I also has a shortened loop at the entrance of the cellulose-binding tunnel, which has been described to interact with the substrate in T. reesei Cel7A. These structural features might explain why T. harzianum Cel7A displays higher k(cat) and K(m) values, and lower product inhibition on both glucoside and lactoside substrates, compared with T. reesei Cel7A.

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Primary Citation of related structures