2YMZ image
Deposition Date 2012-10-11
Release Date 2013-08-28
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2YMZ
Title:
Crystal structure of chicken Galectin 2
Biological Source:
Source Organism:
GALLUS GALLUS (Taxon ID: 9031)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GALECTIN 2
Gene (Uniprot):LGALS2
Chain IDs:A, B, C, D, E, F
Chain Length:130
Number of Molecules:6
Biological Source:GALLUS GALLUS
Ligand Molecules
Peptide-like Molecules
PRD_900004
Primary Citation
Fine-Tuning of Prototype Chicken Galectins: Structure of Cg-2 and Structure-Activity Correlations
Acta Crystallogr.,Sect.D 69 1665 ? (2013)
PMID: 23999290 DOI: 10.1107/S0907444913011773

Abstact

The comparatively small number of members of the family of adhesion/growth-regulatory galectins in chicken predestines this system as an attractive model to study the divergence of these lectins after gene duplication. Expression profiling of the three homodimeric (prototype) chicken galectins (CG-1A, CG-1B and CG-2) has raised evidence of distinct functionalities, explaining the interest in a detailed crystallographic analysis of CG-2. As revealed here, marked differences are found in the ligand-binding site and in the contact pattern within the homodimer interface, underlying a characteristic orientation of the two subunits. Notably, a distinctive trimer of dimers that is unique in all galectin crystal structures reported to date forms the core unit of the crystallographic assembly. Combination with spectroscopic and thermodynamic measurements, and comparisons with CG-1A and CG-1B, identify differential changes in the circular-dichroism spectra in the presence of lactose, reflecting the far-reaching impact of the ligand on hydrodynamic behaviour, and inter-galectin differences in both the entropy and the enthalpy of binding. This structural information is a salient step to complete the analysis of the full set of galectins from this model organism.

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Primary Citation of related structures