2YL7 image
Entry Detail
PDB ID:
2YL7
Title:
CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16G VARIANT AT 0.9 A RESOLUTION - RESTRAINT REFINEMENT
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2011-05-31
Release Date:
2011-10-05
Method Details:
Experimental Method:
Resolution:
0.90 Å
R-Value Free:
0.13
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:CYTOCHROME C'
Mutations:YES
Chain IDs:A
Chain Length:127
Number of Molecules:1
Biological Source:ACHROMOBACTER XYLOSOXIDANS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLU PYROGLUTAMIC ACID
Primary Citation
Carbon Monoxide Poisoning is Prevented by the Energy Costs of Conformational Changes in Gas- Binding Haemproteins.
Proc.Natl.Acad.Sci.USA 108 15780 ? (2011)
PMID: 21900609 DOI: 10.1073/PNAS.1109051108

Abstact

Carbon monoxide (CO) is a product of haem metabolism and organisms must evolve strategies to prevent endogenous CO poisoning of haemoproteins. We show that energy costs associated with conformational changes play a key role in preventing irreversible CO binding. AxCYTcp is a member of a family of haem proteins that form stable 5c-NO and 6c-CO complexes but do not form O(2) complexes. Structure of the AxCYTcp-CO complex at 1.25 Å resolution shows that CO binds in two conformations moderated by the extent of displacement of the distal residue Leu16 toward the haem 7-propionate. The presence of two CO conformations is confirmed by cryogenic resonance Raman data. The preferred linear Fe-C-O arrangement (170 ± 8°) is accompanied by a flip of the propionate from the distal to proximal face of the haem. In the second conformation, the Fe-C-O unit is bent (158 ± 8°) with no flip of propionate. The energetic cost of the CO-induced Leu-propionate movements is reflected in a 600 mV (57.9 kJ mol(-1)) decrease in haem potential, a value in good agreement with density functional theory calculations. Substitution of Leu by Ala or Gly (structures determined at 1.03 and 1.04 Å resolutions) resulted in a haem site that binds CO in the linear mode only and where no significant change in redox potential is observed. Remarkably, these variants were isolated as ferrous 6c-CO complexes, attributable to the observed eight orders of magnitude increase in affinity for CO, including an approximately 10,000-fold decrease in the rate of dissociation. These new findings have wide implications for preventing CO poisoning of gas-binding haem proteins.

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