2YKN image
Deposition Date 2011-05-28
Release Date 2011-08-17
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2YKN
Keywords:
Title:
Crystal structure of HIV-1 Reverse Transcriptase (RT) in complex with a Difluoromethylbenzoxazole (DFMB) Pyrimidine Thioether derivative, a non-nucleoside RT inhibitor (NNRTI)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:REVERSE TRANSCRIPTASE/RIBONUCLEASE H
Gene (Uniprot):gag-pol
Mutagens:YES
Chain IDs:A
Chain Length:562
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BH10
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:REVERSE TRANSCRIPTASE/RIBONUCLEASE H
Gene (Uniprot):gag-pol
Chain IDs:B
Chain Length:428
Number of Molecules:1
Biological Source:HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 BH10
Primary Citation
Difluoromethylbenzoxazole Pyrimidine Thioether Derivatives: A Novel Class of Potent Non-Nucleoside HIV-1 Reverse Transcriptase Inhibitors.
J.Med.Chem. 54 7974 ? (2011)
PMID: 22017513 DOI: 10.1021/JM200766B

Abstact

This paper reports the synthesis and antiviral properties of new difluoromethylbenzoxazole (DFMB) pyrimidine thioether derivatives as non-nucleoside HIV-1 reverse transcriptase inhibitors. By use of a combination of structural biology study and traditional medicinal chemistry, several members of this novel class were synthesized using a single electron transfer chain process (radical nucleophilic substitution, S(RN)1) and were found to be potent against wild-type HIV-1 reverse transcriptase, with low cytotoxicity but with moderate activity against drug-resistant strains. The most promising compound 24 showed a significant EC(50) value close to 6.4 nM against HIV-1 IIIB, a moderate EC(50) value close to 54 μM against an NNRTI resistant double mutant (K103N + Y181C), but an excellent selectivity index >15477 (CC(50) > 100 μM).

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