2YGV image
Deposition Date 2011-04-21
Release Date 2012-02-15
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2YGV
Title:
Conserved N-terminal domain of the yeast Histone Chaperone Asf1 in complex with the C-terminal fragment of Rad53
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.94 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HISTONE CHAPERONE ASF1
Gene (Uniprot):ASF1
Chain IDs:A, B, C, D
Chain Length:158
Number of Molecules:4
Biological Source:SACCHAROMYCES CEREVISIAE
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SERINE/THREONINE-PROTEIN KINASE RAD53
Gene (Uniprot):RAD53
Chain IDs:E, F, G, H
Chain Length:22
Number of Molecules:4
Biological Source:SACCHAROMYCES CEREVISIAE
Primary Citation
Surprising Complexity of the Asf1 Histone Chaperone-Rad53 Kinase Interaction
Proc.Natl.Acad.Sci.USA 109 2866 ? (2012)
PMID: 22323608 DOI: 10.1073/PNAS.1106023109

Abstact

The histone chaperone Asf1 and the checkpoint kinase Rad53 are found in a complex in budding yeast cells in the absence of genotoxic stress. Our data suggest that this complex involves at least three interaction sites. One site involves the H3-binding surface of Asf11 with an as yet undefined surface of Rad53. A second site is formed by the Rad53-FHA1 domain binding to Asf1-T(270) phosphorylated by casein kinase II. The third site involves the C-terminal 21 amino acids of Rad53 bound to the conserved Asf1 N-terminal domain. The structure of this site showed that the Rad53 C-terminus binds Asf1 in a remarkably similar manner to peptides derived from the histone cochaperones HirA and CAF-I. We call this binding motif, (R/K)R(I/A/V) (L/P), the AIP box for Asf1-Interacting Protein box. Furthermore, C-terminal Rad53-F(820) binds the same pocket of Asf1 as does histone H4-F(100). Thus Rad53 competes with histones H3-H4 and cochaperones HirA/CAF-I for binding to Asf1. Rad53 is phosphorylated and activated upon genotoxic stress. The Asf1-Rad53 complex dissociated when cells were treated with hydroxyurea but not methyl-methane-sulfonate, suggesting a regulation of the complex as a function of the stress. We identified a rad53 mutation that destabilized the Asf1-Rad53 complex and increased the viability of rad9 and rad24 mutants in conditions of genotoxic stress, suggesting that complex stability impacts the DNA damage response.

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