2YGI image
Deposition Date 2011-04-18
Release Date 2012-04-25
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2YGI
Keywords:
Title:
Methanobactin HM1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.80 Å
R-Value Free:
0.08
R-Value Observed:
0.06
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:METHANOBACTIN HM1
Chain IDs:A, B, C, D
Chain Length:6
Number of Molecules:4
Biological Source:METHYLOCYSTIS HIRSUTA
Ligand Molecules
Primary Citation
Variations in Methanobactin Structure Influences Copper Utilization by Methane-Oxidizing Bacteria.
Proc.Natl.Acad.Sci.USA 109 8400 ? (2012)
PMID: 22582172 DOI: 10.1073/PNAS.1112921109

Abstact

Methane-oxidizing bacteria are nature's primary biological mechanism for suppressing atmospheric levels of the second-most important greenhouse gas via methane monooxygenases (MMOs). The copper-containing particulate enzyme is the most widespread and efficient MMO. Under low-copper conditions methane-oxidizing bacteria secrete the small copper-binding peptide methanobactin (mbtin) to acquire copper, but how variations in the structures of mbtins influence copper metabolism and species selection are unknown. Methanobactins have been isolated from Methylocystis strains M and hirsuta CSC1, organisms that can switch to using an iron-containing soluble MMO when copper is limiting, and the nonswitchover Methylocystis rosea. These mbtins are shorter, and have different amino acid compositions, than the characterized mbtin from Methylosinus trichosporium OB3b. A coordinating pyrazinedione ring in the Methylocystis mbtins has little influence on the Cu(I) site structure. The Methylocystis mbtins have a sulfate group that helps stabilize the Cu(I) forms, resulting in affinities of approximately 10(21) M(-1). The Cu(II) affinities vary over three orders of magnitude with reduction potentials covering approximately 250 mV, which may dictate the mechanism of intracellular copper release. Copper uptake and the switchover from using the iron-containing soluble MMO to the copper-containing particulate enzyme is faster when mediated by the native mbtin, suggesting that the amino acid sequence is important for the interaction of mbtins with receptors. The differences in structures and properties of mbtins, and their influence on copper utilization by methane-oxidizing bacteria, have important implications for the ecology and global function of these environmentally vital organisms.

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Primary Citation of related structures