2YGB image
Deposition Date 2011-04-13
Release Date 2011-07-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2YGB
Keywords:
Title:
Structure of vaccinia virus D13 scaffolding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.81 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RIFAMPICIN RESISTANCE PROTEIN
Gene (Uniprot):OPG125
Chain IDs:A, B, C
Chain Length:569
Number of Molecules:3
Biological Source:VACCINIA VIRUS WESTERN RESERVE
Primary Citation
Insights Into the Evolution of a Complex Virus from the Crystal Structure of Vaccinia Virus D13.
Structure 19 1011 ? (2011)
PMID: 21742267 DOI: 10.1016/J.STR.2011.03.023

Abstact

The morphogenesis of poxviruses such as vaccinia virus (VACV) sees the virion shape mature from spherical to brick-shaped. Trimeric capsomers of the VACV D13 protein form a transitory, stabilizing lattice on the surface of the initial spherical immature virus particle. The crystal structure of D13 reveals that this major scaffolding protein comprises a double β barrel "jelly-roll" subunit arranged as pseudo-hexagonal trimers. These structural features are characteristic of the major capsid proteins of a lineage of large icosahedral double-stranded DNA viruses including human adenovirus and the bacteriophages PRD1 and PM2. Structure-based phylogenetic analysis confirms that VACV belongs to this lineage, suggesting that (analogously to higher organism embryogenesis) early poxvirus morphogenesis reflects their evolution from a lineage of viruses sharing a common icosahedral ancestor.

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Primary Citation of related structures
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