2YFY image
Deposition Date 2011-04-11
Release Date 2011-06-29
Last Version Date 2025-04-09
Entry Detail
PDB ID:
2YFY
Title:
SERCA in the HnE2 State Complexed With Debutanoyl Thapsigargin
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
Gene (Uniprot):ATP2A1
Chain IDs:A
Chain Length:994
Number of Molecules:1
Biological Source:ORYCTOLAGUS CUNICULUS
Primary Citation
Mutual Adaptation of a Membrane Protein and its Lipid Bilayer During Conformational Changes.
Nat.Commun. 2 304 ? (2011)
PMID: 21556058 DOI: 10.1038/NCOMMS1307

Abstact

The structural elucidation of membrane proteins continues to gather pace, but we know little about their molecular interactions with the lipid environment or how they interact with the surrounding bilayer. Here, with the aid of low-resolution X-ray crystallography, we present direct structural information on membrane interfaces as delineated by lipid phosphate groups surrounding the sarco(endo)plasmic reticulum Ca(2+)-ATPase (SERCA) in its phosphorylated and dephosphorylated Ca(2+)-free forms. The protein-lipid interactions are further analysed using molecular dynamics simulations. We find that SERCA adapts to membranes of different hydrophobic thicknesses by inducing local deformations in the lipid bilayers and by undergoing small rearrangements of the amino-acid side chains and helix tilts. These mutually adaptive interactions allow smooth transitions through large conformational changes associated with the transport cycle of SERCA, a strategy that may be of general nature for many membrane proteins.

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