2YDU image
Deposition Date 2011-03-24
Release Date 2011-11-02
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2YDU
Keywords:
Title:
Crystal structure of YopH in complex with 3-(1,1-dioxido-3- oxoisothiazolidin-5-yl)benzaldeyde
Biological Source:
Source Organism:
YERSINIA PESTIS (Taxon ID: 632)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.79 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:OUTER PROTEIN H PHOSPHATASE
Chain IDs:A
Chain Length:306
Number of Molecules:1
Biological Source:YERSINIA PESTIS
Ligand Molecules
Primary Citation
Isothiazolidinone (Izd) as a Phosphoryl Mimetic in Inhibitors of the Yersinia Pestis Protein Tyrosine Phosphatase Yoph.
Acta Crystallogr.,Sect.D 67 639 ? (2011)
PMID: 21697602 DOI: 10.1107/S0907444911018610

Abstact

Isothiazolidinone (IZD) heterocycles can act as effective components of protein tyrosine phosphatase (PTP) inhibitors by simultaneously replicating the binding interactions of both a phosphoryl group and a highly conserved water molecule, as exemplified by the structures of several PTP1B-inhibitor complexes. In the first unambiguous demonstration of IZD interactions with a PTP other than PTP1B, it is shown by X-ray crystallography that the IZD motif binds within the catalytic site of the Yersinia pestis PTP YopH by similarly displacing a highly conserved water molecule. It is also shown that IZD-based bidentate ligands can inhibit YopH in a nonpromiscuous fashion at low micromolar concentrations. Hence, the IZD moiety may represent a useful starting point for the development of YopH inhibitors.

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Primary Citation of related structures