2Y8E image
Deposition Date 2011-02-04
Release Date 2011-07-06
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2Y8E
Keywords:
Title:
Crystal structure of D. melanogaster Rab6 GTPase bound to GMPPNP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.39 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RAB-PROTEIN 6
Gene (Uniprot):Rab6
Chain IDs:A, B
Chain Length:179
Number of Molecules:2
Biological Source:DROSOPHILA MELANOGASTER
Primary Citation
Structure of the Drosophila Melanogaster Rab6 Gtpase at 1.4 A Resolution
Acta Crystallogr.,Sect.F 67 744 ? (2011)
PMID: 21795785 DOI: 10.1107/S1744309111017453

Abstact

Rab6 is a small GTPase that belongs to the p21 Ras superfamily. It is involved in vesicle trafficking between the Golgi apparatus and endosomes/ER in eukaryotes. The GDP-bound inactive protein undergoes conformational changes when the nucleotide is exchanged to GTP, allowing Rab6 to interact with a variety of different effector proteins. To further understand how these changes affect downstream protein binding, the crystal structure of Rab6 from Drosophila melanogaster has been solved to 1.4 Å resolution, the highest resolution for a Rab6 structure to date. The crystals belonged to space group C2, with unit-cell parameters a=116.5, b=42.71, c=86.86 Å, α=90, β=133.12, γ=90°. The model was refined to an R factor of 14.5% and an Rfree of 17.3%.

Legend

Protein

Chemical

Disease

Primary Citation of related structures