2Y5I image
Deposition Date 2011-01-13
Release Date 2011-07-27
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2Y5I
Title:
S100Z from zebrafish in complex with calcium
Biological Source:
Source Organism:
DANIO RERIO (Taxon ID: 7955)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S100 CALCIUM BINDING PROTEIN Z
Gene (Uniprot):s100z
Chain IDs:A, B, C, D, E, F
Chain Length:99
Number of Molecules:6
Biological Source:DANIO RERIO
Primary Citation
The Crystal Structure of Zebrafish S100Z: Implications for Calcium-Promoted S100 Protein Oligomerisation.
J.Mol.Biol. 411 1072 ? (2011)
PMID: 21756915 DOI: 10.1016/J.JMB.2011.06.048

Abstact

The S100 family, with about 20 members in humans, is composed of EF-hand calcium-regulated proteins and is linked to a range of serious human diseases, including cancer and autoimmune and neurological disorders. The oldest S100 family members are found in teleosts (bony fish). The zebrafish, Danio rerio, was suggested as a promising model system for in vivo studies on S100 family functions, and we chose to investigate zebrafish S100Z as the closest homologue of the metastasis-promoting human S100A4. Here, we report the first crystal structure of an S100 protein from this organism, the calcium-bound state of S100Z to 2.03 Å resolution. Crystal packing suggests higher-order oligomerisation of S100Z dimers, with a tetramerisation interface very similar to, but even more extensive than, that reported for S100A4. The interactions are primarily through the C-terminal αIV helices from adjacent dimers in an antiparallel orientation. Structural comparisons between known S100 multimeric assemblies together with analysis of calcium-driven changes to the dimerisation cores suggest a mechanism for calcium-promoted oligomerisation of S100 proteins.

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Primary Citation of related structures