2Y4Q image
Deposition Date 2011-01-07
Release Date 2011-12-21
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2Y4Q
Title:
Solution structure of the EF-hand domain of Human Polycystin 2
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
25
Conformers Submitted:
20
Selection Criteria:
NO VIOLATIONS > 0.25A
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:POLYCYSTIN-2
Gene (Uniprot):PKD2
Chain IDs:A
Chain Length:79
Number of Molecules:1
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
A High-Resolution Structure of the EF-Hand Domain of Human Polycystin-2.
Protein Sci. 23 1301 ? (2014)
PMID: 24990821 DOI: 10.1002/PRO.2513

Abstact

Autosomal dominant polycystic kidney disease (ADPKD) affects over 1:1000 of the worldwide population and is caused by mutations in two genes, PKD1 and PKD2. PKD2 encodes a 968-amino acid membrane spanning protein, Polycystin-2 (PC-2), which is a member of the TRP ion channel family. The C-terminal cytoplasmic tail contains an EF-hand motif followed by a short coiled-coil domain. We have determined the structure of the EF-hand region of PC-2 using NMR spectroscopy. The use of different boundaries, compared with those used in previous studies, have enabled us to determine a high resolution structure and show that the EF hand motif forms a standard calcium-binding pocket. The affinity of this pocket for calcium has been measured and mutants that both decrease and increase its affinity for the metal ion have been created.

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Primary Citation of related structures