2Y34 image
Deposition Date 2010-12-18
Release Date 2010-12-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2Y34
Keywords:
Title:
S-nitrosylated PHD2 (NO exposed) in complex with Fe(II) and UN9
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.22
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 63
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:EGL NINE HOMOLOG 1
Gene (Uniprot):EGLN1
Chain IDs:A
Chain Length:252
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SNC A CYS S-NITROSO-CYSTEINE
Primary Citation

Abstact

The hypoxic response in animals is mediated via the transcription factor hypoxia-inducible factor (HIF). An oxygen-sensing component of the HIF system is provided by Fe(II) and 2-oxoglutarate-dependent oxygenases that catalyse the posttranslational hydroxylation of the HIF-α subunit. It is proposed that the activity of the HIF hydroxylases can be regulated by their reaction with nitric oxide. We describe biochemical and biophysical studies on the reaction of prolyl hydroxylase domain-containing enzyme (PHD) isoform 2 (EGLN1) with nitric oxide and a nitric oxide transfer reagent. The combined results reveal the potential for the catalytic domain of PHD2 to react with nitric oxide both at its Fe(II) and at cysteine residues. Although the biological significance is unclear, the results suggest that the reaction of PHD2 with nitric oxide has the potential to be complex and are consistent with proposals based on cellular studies that nitric oxide may regulate the hypoxic response by direct reaction with the HIF hydroxylases.

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Primary Citation of related structures
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