2XS8 image
Deposition Date 2010-09-24
Release Date 2010-11-03
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2XS8
Title:
Crystal Structure of ALIX in complex with the SIVagmTan-1 AYDPARKLL Late Domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN
Gene (Uniprot):PDCD6IP
Mutagens:YES
Chain IDs:A
Chain Length:704
Number of Molecules:1
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SIVAGMTAN-1 GAG P6
Chain IDs:B
Chain Length:18
Number of Molecules:1
Biological Source:SIMIAN IMMUNODEFICIENCY VIRUS
Primary Citation
Identification and Structural Characterization of the Alix-Binding Late Domains of Sivmac239 and Sivagmtan-1.
J.Virol. 85 632 ? (2011)
PMID: 20962096 DOI: 10.1128/JVI.01683-10

Abstact

Retroviral Gag proteins contain short late-domain motifs that recruit cellular ESCRT pathway proteins to facilitate virus budding. ALIX-binding late domains often contain the core consensus sequence YPX(n)L (where X(n) can vary in sequence and length). However, some simian immunodeficiency virus (SIV) Gag proteins lack this consensus sequence, yet still bind ALIX. We mapped divergent, ALIX-binding late domains within the p6(Gag) proteins of SIV(mac239) ((40)SREKPYKEVTEDLLHLNSLF(59)) and SIV(agmTan-1) ((24)AAGAYDPARKLLEQYAKK(41)). Crystal structures revealed that anchoring tyrosines (in lightface) and nearby hydrophobic residues (underlined) contact the ALIX V domain, revealing how lentiviruses employ a diverse family of late-domain sequences to bind ALIX and promote virus budding.

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Primary Citation of related structures