2XJH image
Deposition Date 2010-07-06
Release Date 2011-02-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2XJH
Keywords:
Title:
Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
0.92 Å
R-Value Free:
0.14
R-Value Observed:
0.12
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:METHANOBACTIN MB-OB3B
Gene (Uniprot):mbnA
Chain IDs:A, B
Chain Length:11
Number of Molecules:2
Biological Source:METHYLOSINUS TRICHOSPORIUM
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
BB9 A CYS ?
Peptide-like Molecules
PRD_000762
Primary Citation

Abstact

Methanobactins (mbs) are a class of copper-binding peptides produced by aerobic methane oxidizing bacteria (methanotrophs) that have been linked to the substantial copper needs of these environmentally important microorganisms. The only characterized mbs are those from Methylosinus trichosporium OB3b and Methylocystis strain SB2. M. trichosporium OB3b produces a second mb (mb-Met), which is missing the C-terminal Met residue from the full-length form (FL-mb). The as-isolated copper-loaded mbs bind Cu(I). The absence of the Met has little influence on the structure of the Cu(I) site, and both molecules mediate switchover from the soluble iron methane mono-oxygenase to the particulate copper-containing enzyme in M. trichosporium OB3b cells. Cu(II) is reduced in the presence of the mbs under our experimental conditions, and the disulfide plays no role in this process. The Cu(I) affinities of these molecules are extremely high with values of (6-7) × 10(20) M(-1) determined at pH ≥ 8.0. The affinity for Cu(I) is 1 order of magnitude lower at pH 6.0. The reduction potentials of copper-loaded FL-mb and mb-Met are 640 and 590 mV respectively, highlighting the strong preference for Cu(I) and indicating different Cu(II) affinities for the two forms. Cleavage of the disulfide bridge results in a decrease in the Cu(I) affinity to ∼9 × 10(18) M(-1) at pH 7.5. The two thiolates can also bind Cu(I), albeit with much lower affinity (∼ 3 × 10(15) M(-1) at pH 7.5). The high affinity of mbs for Cu(I) is consistent with a physiological role in copper uptake and protection.

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Primary Citation of related structures