2XI6 image
Entry Detail
PDB ID:
2XI6
Keywords:
Title:
The structure of ascorbate peroxidase Compound I
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-06-29
Release Date:
2010-07-14
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ASCORBATE PEROXIDASE
Chain IDs:A
Chain Length:249
Number of Molecules:1
Biological Source:GLYCINE MAX
Primary Citation
Nature of the ferryl heme in compounds I and II.
J. Biol. Chem. 286 1260 1268 (2011)
PMID: 21062738 DOI: 10.1074/jbc.M110.183483

Abstact

Heme enzymes are ubiquitous in biology and catalyze a vast array of biological redox processes. The formation of high valent ferryl intermediates of the heme iron (known as Compounds I and Compound II) is implicated for a number of catalytic heme enzymes, but these species are formed only transiently and thus have proved somewhat elusive. In consequence, there has been conflicting evidence as to the nature of these ferryl intermediates in a number of different heme enzymes, in particular the precise nature of the bond between the heme iron and the bound oxygen atom. In this work, we present high resolution crystal structures of both Compound I and Compound II intermediates in two different heme peroxidase enzymes, cytochrome c peroxidase and ascorbate peroxidase, allowing direct and accurate comparison of the bonding interactions in the different intermediates. A consistent picture emerges across all structures, showing lengthening of the ferryl oxygen bond (and presumed protonation) on reduction of Compound I to Compound II. These data clarify long standing inconsistencies on the nature of the ferryl heme species in these intermediates.

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