2XDC image
Deposition Date 2010-04-30
Release Date 2010-08-11
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2XDC
Keywords:
Title:
Structure of linear gramicidin D obtained using Type I crystals grown in a lipid cubic phase.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GRAMICIDIN A
Chain IDs:A, B, C, D, E, F
Chain Length:16
Number of Molecules:6
Biological Source:BREVIBACILLUS BREVIS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FVA A VAL N-FORMYL-L-VALINE
Peptide-like Molecules
PRD_000150
Primary Citation
Crystallizing Transmembrane Peptides in Lipidic Mesophases
Biophys.J. 99 23 ? (2010)
PMID: 20682243 DOI: 10.1016/J.BPJ.2010.05.011

Abstact

Structure determination of membrane proteins by crystallographic means has been facilitated by crystallization in lipidic mesophases. It has been suggested, however, that this so-called in meso method, as originally implemented, would not apply to small protein targets having </=4 transmembrane crossings. In our study, the hypothesis that the inherent flexibility of the mesophase would enable crystallogenesis of small proteins was tested using a transmembrane pentadecapeptide, linear gramicidin, which produced structure-grade crystals. This result suggests that the in meso method should be considered as a viable means for high-resolution structure determination of integral membrane peptides, many of which are predicted to be coded for in the human genome.

Legend

Protein

Chemical

Disease