2XD8 image
Entry Detail
PDB ID:
2XD8
Keywords:
Title:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2010-04-30
Release Date:
2010-06-16
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:T7-LIKE CAPSID PROTEIN
Chain IDs:A, B, C, D, E, F, G
Chain Length:375
Number of Molecules:7
Biological Source:PROCHLOROCOCCUS PHAGE P-SSP7
Ligand Molecules
Primary Citation
Structural Changes in a Marine Podovirus Associated with Release of its Genome Into Prochlorococcus
Nat.Struct.Mol.Biol. 17 830 ? (2010)
PMID: 20543830 DOI: 10.1038/NSMB.1823

Abstact

Podovirus P-SSP7 infects Prochlorococcus marinus, the most abundant oceanic photosynthetic microorganism. Single-particle cryo-electron microscopy yields icosahedral and asymmetrical structures of infectious P-SSP7 with 4.6-A and 9-A resolution, respectively. The asymmetric reconstruction reveals how symmetry mismatches are accommodated among five of the gene products at the portal vertex. Reconstructions of infectious and empty particles show a conformational change of the 'valve' density in the nozzle, an orientation difference in the tail fibers, a disordering of the C terminus of the portal protein and the disappearance of the core proteins. In addition, cryo-electron tomography of P-SSP7 infecting Prochlorococcus showed the same tail-fiber conformation as that in empty particles. Our observations suggest a mechanism whereby, upon binding to the host cell, the tail fibers induce a cascade of structural alterations of the portal vertex complex that triggers DNA release.

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Primary Citation of related structures