2XBB image
Deposition Date 2010-04-08
Release Date 2011-03-23
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2XBB
Title:
Nedd4 HECT:Ub complex
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
BOS TAURUS (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.68 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 UBIQUITIN-PROTEIN LIGASE NEDD4
Gene (Uniprot):NEDD4
Chain IDs:A, B
Chain Length:386
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:UBIQUITIN
Chain IDs:C, D
Chain Length:76
Number of Molecules:2
Biological Source:BOS TAURUS
Ligand Molecules
Primary Citation
Structure of the Hect:Ubiquitin Complex and its Role in Ubiquitin Chain Elongation
Embo Rep. 12 342 ? (2011)
PMID: 21399620 DOI: 10.1038/EMBOR.2011.21

Abstact

Several mechanisms have been proposed for the synthesis of substrate-linked ubiquitin chains. HECT ligases directly catalyse protein ubiquitination and have been found to non-covalently interact with ubiquitin. We report crystal structures of the Nedd4 HECT domain, alone and in complex with ubiquitin, which show a new binding mode involving two surfaces on ubiquitin and both subdomains of the HECT N-lobe. The structures suggest a model for HECT-to-substrate ubiquitin transfer, in which the growing chain on the substrate is kept close to the catalytic cysteine to promote processivity. Mutational analysis highlights differences between the processes of substrate polyubiquitination and self-ubiquitination.

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Primary Citation of related structures