2X8R image
Deposition Date 2010-03-11
Release Date 2010-09-08
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2X8R
Keywords:
Title:
The structure of a family GH25 lysozyme from Aspergillus fumigatus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GLYCOSYL HYDROLASE
Gene (Uniprot):AFUA_8G06980
Chain IDs:A, B, C, D, E, F
Chain Length:210
Number of Molecules:6
Biological Source:ASPERGILLUS FUMIGATUS
Ligand Molecules
Primary Citation
The Structure of a Family Gh25 Lysozyme from Aspergillus Fumigatus
Acta Crystallogr.,Sect.F 66 973 ? (2010)
PMID: 20823508 DOI: 10.1107/S1744309110025601

Abstact

Lysins are important biomolecules which cleave the bacterial cell-wall polymer peptidoglycan. They are finding increasing commercial and medical application. In order to gain an insight into the mechanism by which these enzymes operate, the X-ray structure of a CAZy family GH25 ;lysozyme' from Aspergillus fumigatus was determined. This is the first fungal structure from the family and reveals a modified alpha/beta-barrel-like fold in which an eight-stranded beta-barrel is flanked by three alpha-helices. The active site lies toward the bottom of a negatively charged pocket and its layout has much in common with other solved members of the GH25 and related GH families. A conserved active-site DXE motif may be implicated in catalysis, lending further weight to the argument that this glycoside hydrolase family operates via a ;substrate-assisted' catalytic mechanism.

Legend

Protein

Chemical

Disease

Primary Citation of related structures