2X5N image
Deposition Date 2010-02-10
Release Date 2010-08-25
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2X5N
Keywords:
Title:
Crystal Structure of the SpRpn10 VWA domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.16
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:26S PROTEASOME REGULATORY SUBUNIT RPN10
Gene (Uniprot):rpn10
Chain IDs:A
Chain Length:192
Number of Molecules:1
Biological Source:SCHIZOSACCHAROMYCES POMBE
Ligand Molecules
Primary Citation
The Structure of Rpn10 and its Interactions with Polyubiquitin Chains and the Proteasome Subunit Rpn12.
J.Biol.Chem. 285 33992 ? (2010)
PMID: 20739285 DOI: 10.1074/JBC.M110.134510

Abstact

Schizosaccharomyces pombe Rpn10 (SpRpn10) is a proteasomal ubiquitin (Ub) receptor located within the 19 S regulatory particle where it binds to subunits of both the base and lid subparticles. We have solved the structure of full-length SpRpn10 by determining the crystal structure of the von Willebrand factor type A domain and characterizing the full-length protein by NMR. We demonstrate that the single Ub-interacting motif (UIM) of SpRpn10 forms a 1:1 complex with Lys(48)-linked diUb, which it binds selectively over monoUb and Lys(63)-linked diUb. We further show that the SpRpn10 UIM binds to SpRpn12, a subunit of the lid subparticle, with an affinity comparable with Lys(48)-linked diUb. This is the first observation of a UIM binding other than a Ub fold and suggests that SpRpn12 could modulate the activity of SpRpn10 as a proteasomal Ub receptor.

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Primary Citation of related structures