2X53 image
Deposition Date 2010-02-05
Release Date 2010-02-16
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2X53
Keywords:
Title:
Structure of the phage p2 baseplate in its activated conformation with Sr
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ORF16
Chain IDs:A (auth: 1), Z (auth: Y), AA (auth: Z)
Chain Length:375
Number of Molecules:3
Biological Source:LACTOCOCCUS PHAGE P2
Polymer Type:polypeptide(L)
Molecule:PUTATIVE RECEPTOR BINDING PROTEIN
Chain IDs:B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: I), K (auth: J), L (auth: K), M (auth: L), N (auth: M), O (auth: N), P (auth: O), Q (auth: P), R (auth: Q), S (auth: R)
Chain Length:263
Number of Molecules:18
Biological Source:LACTOCOCCUS PHAGE P2
Polymer Type:polypeptide(L)
Molecule:ORF15
Chain IDs:T (auth: S), U (auth: T), V (auth: U), W (auth: V), X (auth: W), Y (auth: X)
Chain Length:298
Number of Molecules:6
Biological Source:LACTOCOCCUS PHAGE P2
Ligand Molecules
Primary Citation
Structure of Lactococcal Phage P2 Baseplate and its Mechanism of Activation.
Proc.Natl.Acad.Sci.USA 107 6852 ? (2010)
PMID: 20351260 DOI: 10.1073/PNAS.1000232107

Abstact

Siphoviridae is the most abundant viral family on earth which infects bacteria as well as archaea. All known siphophages infecting gram+ Lactococcus lactis possess a baseplate at the tip of their tail involved in host recognition and attachment. Here, we report analysis of the p2 phage baseplate structure by X-ray crystallography and electron microscopy and propose a mechanism for the baseplate activation during attachment to the host cell. This approximately 1 MDa, Escherichia coli-expressed baseplate is composed of three protein species, including six trimers of the receptor-binding protein (RBP). RBPs host-recognition domains point upwards, towards the capsid, in agreement with the electron-microscopy map of the free virion. In the presence of Ca(2+), a cation mandatory for infection, the RBPs rotated 200 degrees downwards, presenting their binding sites to the host, and a channel opens at the bottom of the baseplate for DNA passage. These conformational changes reveal a novel siphophage activation and host-recognition mechanism leading ultimately to DNA ejection.

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Primary Citation of related structures