2WXD image
Deposition Date 2009-11-09
Release Date 2010-02-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2WXD
Keywords:
Title:
A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR BOUND TO PLANT MYROSINASE
Biological Source:
Source Organism:
SINAPIS ALBA (Taxon ID: 3728)
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MYROSINASE
Chain IDs:A (auth: M)
Chain Length:501
Number of Molecules:1
Biological Source:SINAPIS ALBA
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound to Plant Myrosinase
Acta Crystallogr.,Sect.F 66 152 ? (2010)
PMID: 20124710 DOI: 10.1107/S1744309109052865

Abstact

The 1.6 A resolution structure of the micromolar competitive inhibitor S-(N,N-dimethylaminoethyl) phenylacetothiohydroximate-O-sulfate bound to Sinapis alba myrosinase, a plant thioglucosidase, is reported. Myrosinase and its substrates, the glucosinolates, are part of the plant's defence system. The sulfate group and the phenyl group of the inhibitor bind to the aglycon-binding site of the enzyme, whereas the N,N-dimethyl group binds to the glucose-binding site and explains the large improvement in binding affinity compared with previous compounds. The structure suggests ways to increase the potency and specificity of the compound by improving the interactions with the hydrophobic pocket of the aglycon-binding site.

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Primary Citation of related structures