2WVK image
Entry Detail
PDB ID:
2WVK
Keywords:
Title:
Mannosyl-3-phosphoglycerate synthase from Thermus thermophilus HB27 apoprotein
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2009-10-19
Release Date:
2010-03-31
Method Details:
Experimental Method:
Resolution:
2.97 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MANNOSYL-3-PHOSPHOGLYCERATE SYNTHASE
Chain IDs:A, B
Chain Length:391
Number of Molecules:2
Biological Source:THERMUS THERMOPHILUS
Primary Citation
Structural Analysis of Thermus Thermophilus Hb27 Mannosyl-3-Phosphoglycerate Synthase Provides Evidence for a Second Catalytic Metal Ion and New Insight Into the Retaining Mechanism of Glycosyltransferases.
J.Biol.Chem. 285 17857 ? (2010)
PMID: 20356840 DOI: 10.1074/JBC.M109.095976

Abstact

Mannosyl-3-phosphoglycerate synthase is a glycosyltransferase involved in the two-step synthetic pathway of mannosylglycerate, a compatible solute that accumulates in response to salt and/or heat stresses in many microorganisms thriving in hot environments. The three-dimensional structure of mannosyl-3-phosphoglycerate synthase from Thermus thermophilus HB27 in its binary complex form, with GDP-alpha-D-mannose and Mg(2+), shows a second metal binding site, about 6 A away from the mannose moiety. Kinetic and mutagenesis studies have shown that this metal site plays a role in catalysis. Additionally, Asp(167) in the DXD motif is found within van der Waals contact distance of the C1' atom in the mannopyranose ring, suggesting its action as a catalytic nucleophile, either in the formation of a glycosyl-enzyme intermediate according to the double-displacement S(N)2 reaction mechanism or in the stabilization of the oxocarbenium ion-like intermediate according to the D(N)*A(Nss) (S(N)i-like) reaction mechanism. We propose that either mechanism may occur in retaining glycosyltransferases with a GT-A fold, and, based on the gathered structural information, we identified an extended structural signature toward a common scaffold between the inverting and retaining glycosyltransferases.

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