2WRY image
Deposition Date 2009-09-03
Release Date 2010-09-29
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2WRY
Keywords:
Title:
Crystal structure of chicken cytokine interleukin 1 beta
Biological Source:
Source Organism:
GALLUS GALLUS (Taxon ID: 9031)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:INTERLEUKIN-1BETA
Gene (Uniprot):il-1beta
Chain IDs:A
Chain Length:162
Number of Molecules:1
Biological Source:GALLUS GALLUS
Primary Citation
Structural and Functional Comparison of Cytokine Interleukin-1 Beta from Chicken and Human.
Mol.Immunol. 48 947 ? (2011)
PMID: 21288573 DOI: 10.1016/J.MOLIMM.2011.01.002

Abstact

Interleukin-1 beta (IL-1β) is an important cytokine in the immune system. The properties of avian IL-1βs are less well understood than the mammalian IL-1βs, and there is no available structure of avian IL-1βs in the Protein Data Bank. Here, we report the crystal structures of wild-type and Y157F mutant IL-1βs from chicken. Both the wild-type and mutant IL-1βs share a beta-trefoil conformation similar to that of human IL-1β and also have an internal hydrophobic cavity. However, the cavity sizes clearly differ from that of human IL-1β due to the packing of hydrophobic residues. Our studies also reveal that the relative thermal stability of IL-1βs does not correlate with cavity size but rather is dependent on the amino acid residues present around the cavity. This cavity serves as a scaffold for maintaining the structure of the IL-1β core region but does not have a biological function per se. Moreover, we found that human IL-1β cannot induce chemokine expression in chicken fibroblasts or elevate plasma cortisol levels in chickens, implying a lack of cross-species bioactivity. Close examination reveals that significant structural and sequence differences occur in the terminal and some loop regions between human and chicken IL-1βs. These variable regions have been shown to be critical for receptor binding, thus resulting in a lack of species cross-reactivity between human and chicken IL-1β.

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