2WM9 image
Deposition Date 2009-06-30
Release Date 2009-09-22
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2WM9
Keywords:
Title:
Structure of the complex between DOCK9 and Cdc42.
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DEDICATOR OF CYTOKINESIS PROTEIN 9
Gene (Uniprot):DOCK9
Chain IDs:A
Chain Length:428
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:CELL DIVISION CONTROL PROTEIN 42 HOMOLOG
Gene (Uniprot):CDC42
Chain IDs:B
Chain Length:190
Number of Molecules:1
Biological Source:HOMO SAPIENS
Ligand Molecules
Primary Citation
Activation of Rho Gtpases by Dock Exchange Factors is Mediated by a Nucleotide Sensor.
Science 325 1398 ? (2009)
PMID: 19745154 DOI: 10.1126/SCIENCE.1174468

Abstact

Activation of Rho guanosine triphosphatases (GTPases) to the guanine triphosphate (GTP)-bound state is a critical event in their regulation of the cytoskeleton and cell signaling. Members of the DOCK family of guanine nucleotide exchange factors (GEFs) are important activators of Rho GTPases, but the mechanism of activation by their catalytic DHR2 domain is unknown. Through structural analysis of DOCK9-Cdc42 complexes, we identify a nucleotide sensor within the alpha10 helix of the DHR2 domain that contributes to release of guanine diphosphate (GDP) and then to discharge of the activated GTP-bound Cdc42. Magnesium exclusion, a critical factor in promoting GDP release, is mediated by a conserved valine residue within this sensor, whereas binding of GTP-Mg2+ to the nucleotide-free complex results in magnesium-inducing displacement of the sensor to stimulate discharge of Cdc42-GTP. These studies identify an unusual mechanism of GDP release and define the complete GEF catalytic cycle from GDP dissociation followed by GTP binding and discharge of the activated GTPase.

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Primary Citation of related structures