2WJN image
Deposition Date 2009-05-27
Release Date 2009-09-22
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2WJN
Keywords:
Title:
Lipidic sponge phase crystal structure of photosynthetic reaction centre from Blastochloris viridis (high dose)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT
Gene (Uniprot):pufC
Chain IDs:A (auth: C)
Chain Length:336
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:REACTION CENTER PROTEIN H CHAIN
Gene (Uniprot):puhA
Chain IDs:B (auth: H)
Chain Length:258
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:REACTION CENTER PROTEIN L CHAIN
Gene (Uniprot):pufL
Chain IDs:C (auth: L)
Chain Length:274
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:REACTION CENTER PROTEIN M CHAIN
Gene (Uniprot):pufM
Chain IDs:D (auth: M)
Chain Length:324
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME B MET N-FORMYLMETHIONINE
Primary Citation
Lipidic sponge phase crystal structure of a photosynthetic reaction center reveals lipids on the protein surface.
Biochemistry 48 9831 9838 (2009)
PMID: 19743880 DOI: 10.1021/bi900545e

Abstact

Membrane proteins are embedded in a lipid bilayer and maintain strong interactions with lipid molecules. Tightly bound lipids are responsible for vertical positioning and integration of proteins in the membrane and for assembly of multisubunit complexes and occasionally act as substrates. In this work we present the lipidic sponge phase crystal structure of the reaction center from Blastochloris viridis to 1.86 A, which reveals lipid molecules interacting with the protein surface. A diacylglycerol molecule is bound, through a thioether bond, to the N-terminus of the tetraheme cytochrome c subunit. From the electron density recovered at the Q(B) site and the observed change in recombination kinetics in lipidic sponge phase-grown crystals, the mobile ubiquinone appears to be displaced by a monoolein molecule. A 36 A long electron density feature is observed at the interface of transmembrane helices belonging to the H- and M-subunits, probably arising from an unidentified lipid.

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