2WFP image
Deposition Date 2009-04-13
Release Date 2009-07-14
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2WFP
Keywords:
Title:
Crystal structure of mannose 6-phosphate isomerase (apo form) from Salmonella typhimurium
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.67 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MANNOSE-6-PHOSPHATE ISOMERASE
Gene (Uniprot):manA
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:SALMONELLA TYPHIMURIUM
Ligand Molecules
Primary Citation
Crystal Structures of Mannose 6-Phosphate Isomerase from Salmonella Typhimurium Bound to Metal Atoms and Substrate: Implications for Catalytic Mechanism
Acta Crystallogr.,Sect.D 65 724 ? (2009)
PMID: 19564693 DOI: 10.1107/S0907444909013328

Abstact

Mannose-6-phosphate isomerase (MPI) catalyzes the interconversion of mannose 6-phosphate and fructose 6-phosphate. X-ray crystal structures of MPI from Salmonella typhimurium in the apo form (with no metal bound) and in the holo form (with bound Zn2+) and two other structures with yttrium bound at an inhibitory site and complexed with Zn2+ and fructose 6-phosphate (F6P) were determined in order to gain insights into the structure and the isomerization mechanism. Isomerization involves acid/base catalysis with proton transfer between the C1 and C2 atoms of the substrate. His99, Lys132, His131 and Asp270 are close to the substrate and are likely to be the residues involved in proton transfer. The interactions observed at the active site suggest that the ring-opening step is probably catalyzed by His99 and Asp270. An active-site loop consisting of residues 130-133 undergoes conformational changes upon substrate binding. Zn2+ binding induces structural order in the loop consisting of residues 50-54. The metal atom appears to play a role in substrate binding and is probably also important for maintaining the architecture of the active site. Isomerization probably follows the previously suggested cis-enediol mechanism.

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Primary Citation of related structures