2WDW image
Deposition Date 2009-03-27
Release Date 2010-04-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
2WDW
Keywords:
Title:
The Native Crystal Structure of the Primary Hexose Oxidase (Dbv29) in Antibiotic A40926 Biosynthesis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.21 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PUTATIVE HEXOSE OXIDASE
Gene (Uniprot):dbv29
Chain IDs:A, B
Chain Length:523
Number of Molecules:2
Biological Source:NONOMURAEA SP. ATCC 39727
Ligand Molecules
Primary Citation
Interception of Teicoplanin Oxidation Intermediates Yields New Antimicrobial Scaffolds
Nat.Chem.Biol. 7 304 ? (2011)
PMID: 21478878 DOI: 10.1038/NCHEMBIO.556

Abstact

In the search for new efficacious antibiotics, biosynthetic engineering offers attractive opportunities to introduce minor alterations to antibiotic structures that may overcome resistance. Dbv29, a flavin-containing oxidase, catalyzes the four-electron oxidation of a vancomycin-like glycopeptide to yield A40926. Structural and biochemical examination of Dbv29 now provides insights into residues that govern flavinylation and activity, protein conformation and reaction mechanism. In particular, the serendipitous discovery of a reaction intermediate in the crystal structure led us to identify an unexpected opportunity to intercept the normal enzyme mechanism at two different points to create new teicoplanin analogs. Using this method, we synthesized families of antibiotic analogs with amidated and aminated lipid chains, some of which showed marked potency and efficacy against multidrug resistant pathogens. This method offers a new strategy for the development of chemical diversity to combat antibacterial resistance.

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Primary Citation of related structures