2WD4 image
Deposition Date 2009-03-19
Release Date 2009-04-07
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2WD4
Keywords:
Title:
Ascorbate Peroxidase as a heme oxygenase: w41A variant product with t-butyl peroxide
Biological Source:
Source Organism(s):
GLYCINE MAX (Taxon ID: 3847)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ASCORBATE PEROXIDASE
Gene (Uniprot):apx1
Mutagens:YES
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:GLYCINE MAX
Primary Citation
Evidence for Heme Oxygenase Activity in a Heme Peroxidase.
Biochemistry 48 4738 ? (2009)
PMID: 19309109 DOI: 10.1021/BI900118J

Abstact

The heme peroxidase and heme oxygenase enzymes share a common heme prosthetic group but catalyze fundamentally different reactions, the first being H(2)O(2)-dependent oxidation of substrate using an oxidized Compound I intermediate, and the second O(2)-dependent degradation of heme. It has been proposed that these enzymes utilize a common reaction intermediate, a ferric hydroperoxide species, that sits at a crossroads in the mechanism and beyond which there are two mutually exclusive mechanistic pathways. Here, we present evidence to support this proposal in a heme peroxidase. Hence, we describe kinetic data for a variant of ascorbate peroxidase (W41A) which reacts slowly with tert-butyl hydroperoxide and does not form the usual peroxidase Compound I intermediate; instead, structural data show that a product is formed in which the heme has been cleaved at the alpha-meso position, analogous to the heme oxygenase mechanism. We interpret this to mean that the Compound I (peroxidase) pathway is shut down, so that instead the reaction intermediate diverts through the alternative (heme oxygenase) route. A mechanism for formation of the product is proposed and discussed in the light of what is known about the heme oxygenase reaction mechanism.

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Primary Citation of related structures
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