2W88 image
Deposition Date 2009-01-14
Release Date 2009-10-27
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2W88
Title:
Plastocyanin variant with N-terminal Methionine - open structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PLASTOCYANIN
Gene (Uniprot):petE
Chain IDs:A, B, C
Chain Length:106
Number of Molecules:3
Biological Source:PHORMIDIUM LAMINOSUM
Primary Citation
Metal-Mediated Self-Assembly of a Beta-Sandwich Protein.
Chemistry 15 12672 ? (2009)
PMID: 19834935 DOI: 10.1002/CHEM.200901410

Abstact

The beta-sandwich cupredoxin Plastocyanin (Pc) was found to self-assemble in the presence of Zn(2+), a known mediator of protein-protein interfaces. Diffraction-quality crystals of Pc grew from solutions containing zinc acetate as the sole precipitant. Di- and trinuclear zinc sites contribute to the crystal contacts in this structure. A different crystal form, also involving numerous zinc bridging ions, was obtained in the presence of poly(ethylene glycol) 8 000. Comparison of the two crystal forms reveals the effect of macromolecular crowding on self-assembly. Solution-state structural characterisation of the Zn(2+)-mediated Pc oligomers was performed by using a combination of chemical shift perturbation mapping and small-angle X-ray scattering. The data indicate the formation of dimers in solution. The implications for metal-mediated assembly and crystallisation are discussed.

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Primary Citation of related structures