2W6D image
Deposition Date 2008-12-18
Release Date 2009-12-22
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2W6D
Keywords:
Title:
BACTERIAL DYNAMIN-LIKE PROTEIN LIPID TUBE BOUND
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
9.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DYNAMIN FAMILY PROTEIN
Gene (Uniprot):Npun_R6513
Chain IDs:A, B
Chain Length:695
Number of Molecules:2
Biological Source:NOSTOC PUNCTIFORME
Primary Citation
Structure of a Bacterial Dynamin-Like Protein Lipid Tube Provides a Mechanism for Assembly and Membrane Curving.
Cell(Cambridge,Mass.) 139 1342 1352 (2009)
PMID: 20064379 DOI: 10.1016/j.cell.2009.11.003

Abstact

Proteins of the dynamin superfamily mediate membrane fission, fusion, and restructuring events by polymerizing upon lipid bilayers and forcing regions of high curvature. In this work, we show the electron cryomicroscopy reconstruction of a bacterial dynamin-like protein (BDLP) helical filament decorating a lipid tube at approximately 11 A resolution. We fitted the BDLP crystal structure and produced a molecular model for the entire filament. The BDLP GTPase domain dimerizes and forms the tube surface, the GTPase effector domain (GED) mediates self-assembly, and the paddle region contacts the lipids and promotes curvature. Association of BDLP with GMPPNP and lipid induces radical, large-scale conformational changes affecting polymerization. Nucleotide hydrolysis seems therefore to be coupled to polymer disassembly and dissociation from lipid, rather than membrane restructuring. Observed structural similarities with rat dynamin 1 suggest that our results have broad implication for other dynamin family members.

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