2W0X image
Deposition Date 2008-10-10
Release Date 2009-11-24
Last Version Date 2023-12-13
Entry Detail
PDB ID:
2W0X
Keywords:
Title:
FACTOR INHIBITING HIF-1 ALPHA WITH PYRIDINE 2,4 DICARBOXYLIC ACID
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR
Gene (Uniprot):HIF1AN
Chain IDs:A
Chain Length:349
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Structural basis for binding of cyclic 2-oxoglutarate analogues to factor-inhibiting hypoxia-inducible factor.
Bioorg. Med. Chem. Lett. 20 6125 6128 (2010)
PMID: 20822901 DOI: 10.1016/j.bmcl.2010.08.032

Abstact

Aromatic analogues of the 2-oxoglutarate co-substrate of the hypoxia-inducible factor hydroxylases are shown to bind at the active site iron: Pyridine-2,4-dicarboxylate binds as anticipated with a single molecule chelating the iron in a bidentate manner. The binding mode of a hydroxamic acid analogue, at least in the crystalline state, is unusual because two molecules of the inhibitor are observed at the active site and partial displacement of the iron binding aspartyl residue was observed.

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Primary Citation of related structures